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correct detecting cellranger versions and barcode directory #304

correct detecting cellranger versions and barcode directory

correct detecting cellranger versions and barcode directory #304

Workflow file for this run

name: CI to docker hub

Check failure on line 1 in .github/workflows/docker-ci.yml

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GitHub Actions / .github/workflows/docker-ci.yml

Invalid workflow file

`workflow_dispach` is not a valid event name
on: workflow_dispach
jobs:
test:
runs-on: ubuntu-20.04
steps:
-
name: Login to DockerHub
uses: docker/login-action@v1
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
build:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2
- name: pull updates
run: git pull --ff-only origin $(git branch --show-current)
- uses: docker/setup-buildx-action@v1
- uses: docker/login-action@v1
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
registry: ${{ env.REGISTRY }}
- name: Build and push
uses: docker/build-push-action@v2
with:
context: ./
file: ./Dockerfile
tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test
push: false
push:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2
- name: pull updates
run: git pull --ff-only origin $(git branch --show-current)
- uses: docker/setup-buildx-action@v1
- uses: docker/login-action@v1
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
registry: ${{ env.REGISTRY }}
- name: Build and push
uses: docker/build-push-action@v2
with:
context: ./
file: ./Dockerfile
tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test
push: true
diagnostics:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2
- name: pull updates
run: git pull --ff-only origin $(git branch --show-current)
- uses: docker/setup-buildx-action@v1
- uses: docker/login-action@v1
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
registry: ${{ env.REGISTRY }}
- name: Build and push
uses: docker/build-push-action@v2
with:
context: ./
file: ./Dockerfile
tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test
push: false
- name: Hello world
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test echo "hello world"
- name: Repo diagnostics
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d */
- name: Repo size
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 1 *
- name: Parent directory diagnostics
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d ../*/
- name: Parent directory size
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 1 ../*
- name: Grandparent directory diagnostics
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d ../../*/
- name: Grandarent directory size
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 2 ../../*
- name: Root directory diagnostics
run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d /*/
- name: Root directory size
run: df -h