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@SAFEHR-data

SAFEHR

Secure or Anonymised Framework for Electronic Health Records
README.md

Welcome to UCLH Foundry

FlowEHR is an open-source platform for iterative, safe & reproducible development & deployment of data science solutions inside the NHS.

FlowEHR enables multidisciplinary teams to work higher up the stack and focus on improving patient outcomes & health system efficiency.

UCLH Foundry is the GitHub organisation under which the FlowEHR open-source platform lives. The following is a guide to some of the more important repositories you'll find here...

Core FlowEHR

Name Url Description
FlowEHR https://github.com/UCLH-Foundry/FlowEHR FlowEHR is a safe, secure & cloud-native development & deployment platform for digital healthcare research & innovation.
flowehr.io https://github.com/UCLH-Foundry/flowehr.io FlowEHR public site
Garden-Path https://github.com/UCLH-Foundry/Garden-Path Documentation for end users
Azure-Bootstrap https://github.com/UCLH-Foundry/Azure-Bootstrap Utility for bootstrapping common Azure resources needed to store Terraform state, containers and configure build agents.

Data Pipeline

Name Url Description
FlowEHR-Data-Pot https://github.com/UCLH-Foundry/FlowEHR-Data-Pot Example data pipeline

Application and Model Serving

Name Url Description
Dash-Seedling https://github.com/UCLH-Foundry/Dash-Seedling FlowEHR template Dash app
Model-Seedling https://github.com/UCLH-Foundry/Model-Seedling Template repository for Model Endpoints

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  1. FlowEHR FlowEHR Public template

    FlowEHR is a safe, secure & cloud-native development & deployment platform for digital healthcare research & innovation.

    HCL 17 12

  2. Azure-Bootstrap Azure-Bootstrap Public template

    Utility for bootstrapping common Azure resources needed to store Terraform state, containers and configure build agents.

    HCL

  3. Garden-Path Garden-Path Public

    Documentation for end users

    4 2

  4. Dash-Seedling Dash-Seedling Public template

    FlowEHR template Dash app

    Python 1 2

  5. Model-Seedling Model-Seedling Public template

    Template repository for Model Endpoints

    Python

Repositories

Showing 10 of 24 repositories
  • PIXL Public

    PIXL Image eXtraction Laboratory

    SAFEHR-data/PIXL’s past year of commit activity
    Python 8 Apache-2.0 0 47 4 Updated Sep 19, 2024
  • omopcept Public

    omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

    SAFEHR-data/omopcept’s past year of commit activity
    R 6 Apache-2.0 1 1 0 Updated Sep 16, 2024
  • omop-bundles Public

    R package to provide access to OMOP bundles

    SAFEHR-data/omop-bundles’s past year of commit activity
    R 0 0 6 1 Updated Sep 16, 2024
  • Dash-Seedling Public template

    FlowEHR template Dash app

    SAFEHR-data/Dash-Seedling’s past year of commit activity
    Python 1 Apache-2.0 2 6 2 Updated Sep 14, 2024
  • Azure-Bootstrap Public template

    Utility for bootstrapping common Azure resources needed to store Terraform state, containers and configure build agents.

    SAFEHR-data/Azure-Bootstrap’s past year of commit activity
    HCL 0 Apache-2.0 0 2 0 Updated Sep 11, 2024
  • Data-Seedling Public

    Demonstration of Data Transformation stages, such as ingestion, pseudonymisation, and feature extraction.

    SAFEHR-data/Data-Seedling’s past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2024
  • Satellite Public

    Synthetic EMAP star schema

    SAFEHR-data/Satellite’s past year of commit activity
    Python 2 Apache-2.0 2 0 0 Updated Sep 11, 2024
  • flowehr.io Public

    FlowEHR public site

    SAFEHR-data/flowehr.io’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Sep 11, 2024
  • starter-guide Public

    Starter guide for working with SAFEHR-data

    SAFEHR-data/starter-guide’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Sep 10, 2024
  • ramses-package Public Forked from ramses-antibiotics/ramses-package

    R Package for Data-Driven Antimicrobial Stewardship & Surveillance in Hospitals

    SAFEHR-data/ramses-package’s past year of commit activity
    R 2 GPL-3.0 2 10 0 Updated Sep 5, 2024
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