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Switch pangolin to --usher to better deal with non ARTICv3 coverage profiles #70

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bwlang opened this issue Nov 5, 2021 · 0 comments

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bwlang commented Nov 5, 2021

I've observed that some lineages are not specifically assigned when using full coverage data sets unless --usher is passed to pangolin.

@wm75, @mvdbeek , @pvanheus
Any concerns about switching pangolin executions to use that flag?

some background:
cov-lineages/pangolin#244

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