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Workflow to concatenate fastqs from different lanes #311

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lldelisle opened this issue Nov 28, 2023 · 3 comments
Open

Workflow to concatenate fastqs from different lanes #311

lldelisle opened this issue Nov 28, 2023 · 3 comments

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@lldelisle
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It would be good to have a workflow which takes as input a collection with fastqs from different lanes and concatenate if needed samples from the same samples.
@bernt-matthias
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Like demultiplexing? Based on which info will the joining be made or not?

@bwlang
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bwlang commented Dec 3, 2023

I wrote one a while back...
https://usegalaxy.eu/u/brad_langhorst/w/merge-lanes-by-sample

@lldelisle
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Yes exactly like this @bwlang . Would you agree to put it into IWC?

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@bwlang @bernt-matthias @lldelisle