{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":411368855,"defaultBranch":"master","name":"MAGMA","ownerLogin":"TORCH-Consortium","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-09-28T16:59:40.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/101628119?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726578144.0","currentOid":""},"activityList":{"items":[{"before":"78f3914b5661e8c40379a76e17b7a164949b14d4","after":"6355e3517781bd892063a425f70bb5e0b71cd4ca","ref":"refs/heads/develop","pushedAt":"2024-09-18T13:20:00.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Merge branch 'hotfix/bwa_k66' into develop","shortMessageHtmlLink":"Merge branch 'hotfix/bwa_k66' into develop"}},{"before":"012a8c7cc8405597d5066c9b832e6cf0498e89a6","after":"60cad27c5ae058a3b95d0f76ae3a66afbf08d59a","ref":"refs/heads/master","pushedAt":"2024-09-18T13:18:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Merge branch 'hotfix/bwa_k66'","shortMessageHtmlLink":"Merge branch 'hotfix/bwa_k66'"}},{"before":"59d37294feda997aee64d6bbdec29539d319e848","after":"664ba1f2e71da7d5dc13aa701c1e34c074c9d07a","ref":"refs/heads/hotfix/bwa_k66","pushedAt":"2024-09-17T13:25:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Add a test profile in the pipeline (#220)\n\n* add a test samplesheet [ci skip]\r\n\r\n* update the params in test file [ci skip]\r\n\r\n* update the test profile [ci skip]","shortMessageHtmlLink":"Add a test profile in the pipeline (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2489263410\" data-permission-text=\"Title is private\" data-url=\"https://github.com/TORCH-Consortium/MAGMA/issues/220\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/TORCH-Consortium/MAGMA/pull/220/hovercard\" href=\"https://github.com/TORCH-Consortium/MAGMA/pull/220\">#220</a>)"}},{"before":null,"after":"59d37294feda997aee64d6bbdec29539d319e848","ref":"refs/heads/hotfix/bwa_k66","pushedAt":"2024-09-17T13:02:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"add the bwa_k66 profile [ci skip]\n\nSigned-off-by: Abhinav Sharma <abhi18av@outlook.com>","shortMessageHtmlLink":"add the bwa_k66 profile [ci skip]"}},{"before":"51824d67108743d0a09091573a36308e260c1461","after":"012a8c7cc8405597d5066c9b832e6cf0498e89a6","ref":"refs/heads/master","pushedAt":"2024-09-16T13:24:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"improve type-casting [ci skip]","shortMessageHtmlLink":"improve type-casting [ci skip]"}},{"before":"aa7bde2bc8c9f27496be7ec289cf34b50274fdd2","after":"51824d67108743d0a09091573a36308e260c1461","ref":"refs/heads/master","pushedAt":"2024-09-16T13:19:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"handle type-casting of fractional values into boolean one [ci skip]","shortMessageHtmlLink":"handle type-casting of fractional values into boolean one [ci skip]"}},{"before":"d38d9138c17a4f43bcfecb143533d366c0ba2e6d","after":"78f3914b5661e8c40379a76e17b7a164949b14d4","ref":"refs/heads/develop","pushedAt":"2024-09-16T13:19:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"handle type-casting of fractional values into boolean one [ci skip]","shortMessageHtmlLink":"handle type-casting of fractional values into boolean one [ci skip]"}},{"before":"bb04811b2014826bebc180f86d6bc9f7aa68920d","after":"24c534e722b1a4e2ebb73e8dc14f3eb11ead4ec1","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-16T13:14:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"convert the bash script to a python one for better experience [ci skip]","shortMessageHtmlLink":"convert the bash script to a python one for better experience [ci skip]"}},{"before":"3f038cfb60f804f62594bb1fa975278fa45af275","after":"bb04811b2014826bebc180f86d6bc9f7aa68920d","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-16T11:48:16.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"reenable ismapper related code [ci skip]","shortMessageHtmlLink":"reenable ismapper related code [ci skip]"}},{"before":"bb04811b2014826bebc180f86d6bc9f7aa68920d","after":"3f038cfb60f804f62594bb1fa975278fa45af275","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-16T11:45:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"disable other subworkflows [ci skip]","shortMessageHtmlLink":"disable other subworkflows [ci skip]"}},{"before":"0ec0e49c9095e495e5d0f855b6855d0bc9ff96e9","after":"bb04811b2014826bebc180f86d6bc9f7aa68920d","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-16T11:15:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"reenable ismapper related code [ci skip]","shortMessageHtmlLink":"reenable ismapper related code [ci skip]"}},{"before":"2a2c03324add3812c75156c1fe617ba766fc76ee","after":"0ec0e49c9095e495e5d0f855b6855d0bc9ff96e9","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-12T11:31:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"refactor wilma's script to a standard structure [ci skip]","shortMessageHtmlLink":"refactor wilma's script to a standard structure [ci skip]"}},{"before":"f063c37cc0ab77954fbe868b508a6eb7c086dc4b","after":"2a2c03324add3812c75156c1fe617ba766fc76ee","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-12T11:30:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"add the baseline script from wilma [ci skip]","shortMessageHtmlLink":"add the baseline script from wilma [ci skip]"}},{"before":"daad0ac2bc0d45ccc768c4bb593451a63f31cf06","after":"f063c37cc0ab77954fbe868b508a6eb7c086dc4b","ref":"refs/heads/ismapper-patch","pushedAt":"2024-09-11T14:22:23.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Add a test profile in the pipeline (#220)\n\n* add a test samplesheet [ci skip]\r\n\r\n* update the params in test file [ci skip]\r\n\r\n* update the test profile [ci skip]","shortMessageHtmlLink":"Add a test profile in the pipeline (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2489263410\" data-permission-text=\"Title is private\" data-url=\"https://github.com/TORCH-Consortium/MAGMA/issues/220\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/TORCH-Consortium/MAGMA/pull/220/hovercard\" href=\"https://github.com/TORCH-Consortium/MAGMA/pull/220\">#220</a>)"}},{"before":"d0fe36ee1c3af7c76800ac64a8156a0188bf26bb","after":"7a42562b313bde1c7871c00c26e10de1adc50a42","ref":"refs/heads/dev-add-multiqc","pushedAt":"2024-09-05T13:49:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Update multiqc.nf for optional inputs [ ci skip]","shortMessageHtmlLink":"Update multiqc.nf for optional inputs [ ci skip]"}},{"before":"416fd3ce85fe9dcb428119c1625ae832b8a1a25b","after":"d0fe36ee1c3af7c76800ac64a8156a0188bf26bb","ref":"refs/heads/dev-add-multiqc","pushedAt":"2024-08-29T17:11:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Mxrcon","name":"Davi Marcon","path":"/Mxrcon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48180517?s=80&v=4"},"commit":{"message":"uploading multiqc_config","shortMessageHtmlLink":"uploading multiqc_config"}},{"before":"4b5f86a95d846fc4f2b62c5eb3aa796843df1266","after":"416fd3ce85fe9dcb428119c1625ae832b8a1a25b","ref":"refs/heads/dev-add-multiqc","pushedAt":"2024-08-29T13:35:23.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"Mxrcon","name":"Davi Marcon","path":"/Mxrcon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48180517?s=80&v=4"},"commit":{"message":"implementation of multiqc report generation for the V1 report","shortMessageHtmlLink":"implementation of multiqc report generation for the V1 report"}},{"before":null,"after":"4b5f86a95d846fc4f2b62c5eb3aa796843df1266","ref":"refs/heads/dev-add-multiqc","pushedAt":"2024-08-29T13:14:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Mxrcon","name":"Davi Marcon","path":"/Mxrcon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48180517?s=80&v=4"},"commit":{"message":"implementation of multiqc report generation for the V1 report","shortMessageHtmlLink":"implementation of multiqc report generation for the V1 report"}},{"before":"af51fe5d9272719506c92f39fcca3dd4a3f82a58","after":null,"ref":"refs/heads/feature/test-profile","pushedAt":"2024-08-27T15:17:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"}},{"before":"92338e6605f6e06a7e68d1d6d6b8e48412f092ff","after":"d38d9138c17a4f43bcfecb143533d366c0ba2e6d","ref":"refs/heads/develop","pushedAt":"2024-08-27T15:17:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"Add a test profile in the pipeline (#220)\n\n* add a test samplesheet [ci skip]\r\n\r\n* update the params in test file [ci skip]\r\n\r\n* update the test profile [ci skip]","shortMessageHtmlLink":"Add a test profile in the pipeline (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2489263410\" data-permission-text=\"Title is private\" data-url=\"https://github.com/TORCH-Consortium/MAGMA/issues/220\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/TORCH-Consortium/MAGMA/pull/220/hovercard\" href=\"https://github.com/TORCH-Consortium/MAGMA/pull/220\">#220</a>)"}},{"before":"3452b11cd03db5e7d32ce7fd19c887dbf386da12","after":"af51fe5d9272719506c92f39fcca3dd4a3f82a58","ref":"refs/heads/feature/test-profile","pushedAt":"2024-08-27T13:35:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"update the test profile [ci skip]","shortMessageHtmlLink":"update the test profile [ci skip]"}},{"before":"f5b1a3101f1dae40d39e0f2a8ddfe685094979e3","after":"3452b11cd03db5e7d32ce7fd19c887dbf386da12","ref":"refs/heads/feature/test-profile","pushedAt":"2024-08-27T12:53:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"update the params in test file [ci skip]","shortMessageHtmlLink":"update the params in test file [ci skip]"}},{"before":null,"after":"f5b1a3101f1dae40d39e0f2a8ddfe685094979e3","ref":"refs/heads/feature/test-profile","pushedAt":"2024-08-27T12:40:45.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"add a test samplesheet [ci skip]","shortMessageHtmlLink":"add a test samplesheet [ci skip]"}},{"before":"091bc1f833fd0f220c7026b49cb977d7fd1d8743","after":"e24a4ad755a600dc7c1d84734f8f91f040074bc3","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-27T12:23:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"tweak the bash mode [ci skip]","shortMessageHtmlLink":"tweak the bash mode [ci skip]"}},{"before":"2836b6418e3db28891685cf44875628836e29c8b","after":"091bc1f833fd0f220c7026b49cb977d7fd1d8743","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:45:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"revert the keep option [ci skip]","shortMessageHtmlLink":"revert the keep option [ci skip]"}},{"before":"9783374968919a6256a2ea8247ee71e65f666fde","after":"2836b6418e3db28891685cf44875628836e29c8b","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:41:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"tweak the bgzip execution [ci skip]","shortMessageHtmlLink":"tweak the bgzip execution [ci skip]"}},{"before":"c23a772c35e497bd0653333f16ac3b4783ec2a08","after":"9783374968919a6256a2ea8247ee71e65f666fde","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:38:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"tweak the file name [ci skip]","shortMessageHtmlLink":"tweak the file name [ci skip]"}},{"before":"79285fcfaa9d76284cbd389bba432cd5120ce60f","after":"c23a772c35e497bd0653333f16ac3b4783ec2a08","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:34:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"disable stdout [ci skip]","shortMessageHtmlLink":"disable stdout [ci skip]"}},{"before":"9166b2ea01c9b1f7beaa73219c8e5d3087c7e3f9","after":"79285fcfaa9d76284cbd389bba432cd5120ce60f","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:29:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"refactor the snpeff script [ci skip]","shortMessageHtmlLink":"refactor the snpeff script [ci skip]"}},{"before":"9ec4f697340f8232d7118449b4fdaea3889805ab","after":"9166b2ea01c9b1f7beaa73219c8e5d3087c7e3f9","ref":"refs/heads/feature/mbovis-reference","pushedAt":"2024-08-23T14:20:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhi18av","name":"Abhinav Sharma","path":"/abhi18av","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12799326?s=80&v=4"},"commit":{"message":"fix the snpeff output [ci skip]","shortMessageHtmlLink":"fix the snpeff output [ci skip]"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEubclZwA","startCursor":null,"endCursor":null}},"title":"Activity · TORCH-Consortium/MAGMA"}